Genetic networks involved in poplar root response to low nitrogen.
Identifieur interne : 002675 ( Main/Exploration ); précédent : 002674; suivant : 002676Genetic networks involved in poplar root response to low nitrogen.
Auteurs : Hairong Wei [États-Unis] ; Yordan Yordanov [États-Unis] ; Sapna Kumari [États-Unis] ; Tatyana Georgieva [États-Unis] ; Victor Busov [États-Unis]Source :
- Plant signaling & behavior [ 1559-2324 ] ; 2013.
Descripteurs français
- KwdFr :
- Azote (pharmacologie), Populus (croissance et développement), Populus (effets des médicaments et des substances chimiques), Populus (génétique), Racines de plante (croissance et développement), Racines de plante (effets des médicaments et des substances chimiques), Racines de plante (génétique), Réseaux de régulation génique (MeSH), Transduction du signal (effets des médicaments et des substances chimiques), Transduction du signal (génétique).
- MESH :
- croissance et développement : Populus, Racines de plante.
- effets des médicaments et des substances chimiques : Populus, Racines de plante, Transduction du signal.
- génétique : Populus, Racines de plante, Transduction du signal.
- pharmacologie : Azote.
- Réseaux de régulation génique.
English descriptors
- KwdEn :
- MESH :
- chemical , pharmacology : Nitrogen.
- drug effects : Plant Roots, Populus, Signal Transduction.
- genetics : Plant Roots, Populus, Signal Transduction.
- growth & development : Plant Roots, Populus.
- Gene Regulatory Networks.
Abstract
Perception of environmental cues and adaptation to changing environmental conditions are crucial for survival of sessile organisms like plants. This is even more important for woody perennial species like trees that can occupy a site for thousands of years. We have previously shown that under low nitrogen (LN), poplar trees display a vigorous and long-lasting root growth associated with global transcriptomic reprogramming and an activation of hierarchical genetic networks. Here we use computational analysis to better understand the network among the genes showing distinct chronological patterns of expression during the response. Our analyses confirm the previous findings, define new potential signaling pathways and the possible downstream targets of these signaling events.
DOI: 10.4161/psb.27211
PubMed: 24300216
PubMed Central: PMC4091351
Affiliations:
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Michigan Technological University; Houghton</wicri:cityArea></affiliation></author><author><name sortKey="Kumari, Sapna" sort="Kumari, Sapna" uniqKey="Kumari S" first="Sapna" last="Kumari">Sapna Kumari</name><affiliation wicri:level="2"><nlm:affiliation>Department of Mathematics; Michigan Technological University; Houghton, MI USA.</nlm:affiliation><country>États-Unis</country><placeName><region type="state">Michigan</region></placeName><wicri:cityArea>Department of Mathematics; Michigan Technological University; Houghton</wicri:cityArea></affiliation></author><author><name sortKey="Georgieva, Tatyana" sort="Georgieva, Tatyana" uniqKey="Georgieva T" first="Tatyana" last="Georgieva">Tatyana Georgieva</name><affiliation wicri:level="2"><nlm:affiliation>School of Forest Resources and Environmental Science; Michigan Technological University; Houghton, MI USA.</nlm:affiliation><country>États-Unis</country><placeName><region type="state">Michigan</region></placeName><wicri:cityArea>School of Forest Resources and Environmental Science; Michigan Technological University; Houghton</wicri:cityArea></affiliation></author><author><name sortKey="Busov, Victor" sort="Busov, Victor" uniqKey="Busov V" first="Victor" last="Busov">Victor Busov</name><affiliation wicri:level="2"><nlm:affiliation>Biotechnology Research Center; Michigan Technological University; Houghton, MI USA.</nlm:affiliation><country>États-Unis</country><placeName><region type="state">Michigan</region></placeName><wicri:cityArea>Biotechnology Research Center; Michigan Technological University; Houghton</wicri:cityArea></affiliation></author></analytic><series><title level="j">Plant signaling & behavior</title><idno type="eISSN">1559-2324</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Gene Regulatory Networks (MeSH)</term><term>Nitrogen (pharmacology)</term><term>Plant Roots (drug effects)</term><term>Plant Roots (genetics)</term><term>Plant Roots (growth & development)</term><term>Populus (drug effects)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>Signal Transduction (drug effects)</term><term>Signal Transduction (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Azote (pharmacologie)</term><term>Populus (croissance et développement)</term><term>Populus (effets des médicaments et des substances chimiques)</term><term>Populus (génétique)</term><term>Racines de plante (croissance et développement)</term><term>Racines de plante (effets des médicaments et des substances chimiques)</term><term>Racines de plante (génétique)</term><term>Réseaux de régulation génique (MeSH)</term><term>Transduction du signal (effets des médicaments et des substances chimiques)</term><term>Transduction du signal (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Nitrogen</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Populus</term><term>Racines de plante</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Plant Roots</term><term>Populus</term><term>Signal Transduction</term></keywords><keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Populus</term><term>Racines de plante</term><term>Transduction du signal</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Roots</term><term>Populus</term><term>Signal Transduction</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Plant Roots</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term><term>Racines de plante</term><term>Transduction du signal</term></keywords><keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Azote</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Regulatory Networks</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Réseaux de régulation génique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Perception of environmental cues and adaptation to changing environmental conditions are crucial for survival of sessile organisms like plants. This is even more important for woody perennial species like trees that can occupy a site for thousands of years. We have previously shown that under low nitrogen (LN), poplar trees display a vigorous and long-lasting root growth associated with global transcriptomic reprogramming and an activation of hierarchical genetic networks. Here we use computational analysis to better understand the network among the genes showing distinct chronological patterns of expression during the response. Our analyses confirm the previous findings, define new potential signaling pathways and the possible downstream targets of these signaling events. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24300216</PMID><DateCompleted><Year>2014</Year><Month>12</Month><Day>15</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1559-2324</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>11</Issue><PubDate><Year>2013</Year><Month>Nov</Month></PubDate></JournalIssue><Title>Plant signaling & behavior</Title><ISOAbbreviation>Plant Signal Behav</ISOAbbreviation></Journal><ArticleTitle>Genetic networks involved in poplar root response to low nitrogen.</ArticleTitle><Pagination><MedlinePgn>e27211</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.4161/psb.27211</ELocationID><ELocationID EIdType="pii" ValidYN="Y">e27211</ELocationID><Abstract><AbstractText>Perception of environmental cues and adaptation to changing environmental conditions are crucial for survival of sessile organisms like plants. This is even more important for woody perennial species like trees that can occupy a site for thousands of years. We have previously shown that under low nitrogen (LN), poplar trees display a vigorous and long-lasting root growth associated with global transcriptomic reprogramming and an activation of hierarchical genetic networks. Here we use computational analysis to better understand the network among the genes showing distinct chronological patterns of expression during the response. Our analyses confirm the previous findings, define new potential signaling pathways and the possible downstream targets of these signaling events. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wei</LastName><ForeName>Hairong</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>School of Forest Resources and Environmental Science; Michigan Technological University; Houghton, MI USA; Biotechnology Research Center; Michigan Technological University; Houghton, MI USA; Department of Mathematics; Michigan Technological University; Houghton, MI USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yordanov</LastName><ForeName>Yordan</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>School of Forest Resources and Environmental Science; Michigan Technological University; Houghton, MI USA.</Affiliation></AffiliationInfo></Author><Author 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DateType="Electronic"><Year>2013</Year><Month>12</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Signal Behav</MedlineTA><NlmUniqueID>101291431</NlmUniqueID><ISSNLinking>1559-2316</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>N762921K75</RegistryNumber><NameOfSubstance UI="D009584">Nitrogen</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D053263" MajorTopicYN="Y">Gene Regulatory Networks</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009584" MajorTopicYN="N">Nitrogen</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015398" MajorTopicYN="N">Signal Transduction</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Signal transduction</Keyword><Keyword MajorTopicYN="N">biological processes</Keyword><Keyword MajorTopicYN="N">low nitrogen</Keyword><Keyword MajorTopicYN="N">root specific growth</Keyword><Keyword MajorTopicYN="N">transcription factors</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>12</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>12</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>12</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24300216</ArticleId><ArticleId IdType="pii">27211</ArticleId><ArticleId IdType="doi">10.4161/psb.27211</ArticleId><ArticleId IdType="pmc">PMC4091351</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Development. 2011 Jun;138(11):2273-81</Citation><ArticleIdList><ArticleId IdType="pubmed">21558375</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12840-5</Citation><ArticleIdList><ArticleId IdType="pubmed">23847199</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2011 Nov;77(4-5):489-99</Citation><ArticleIdList><ArticleId IdType="pubmed">21935722</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2013 Oct;200(2):483-97</Citation><ArticleIdList><ArticleId IdType="pubmed">23795675</ArticleId></ArticleIdList></Reference><Reference><Citation>Dev Biol. 2012 May 1;365(1):14-22</Citation><ArticleIdList><ArticleId IdType="pubmed">22349629</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10848-53</Citation><ArticleIdList><ArticleId IdType="pubmed">23754401</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2007 Jun 8;316(5830):1477-80</Citation><ArticleIdList><ArticleId IdType="pubmed">17556585</ArticleId></ArticleIdList></Reference><Reference><Citation>Development. 2013 Mar;140(6):1292-300</Citation><ArticleIdList><ArticleId IdType="pubmed">23444357</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 1994 Dec;106(4):1335-1346</Citation><ArticleIdList><ArticleId IdType="pubmed">12232412</ArticleId></ArticleIdList></Reference><Reference><Citation>Dev Cell. 2008 Dec;15(6):913-22</Citation><ArticleIdList><ArticleId IdType="pubmed">19081078</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2010 Mar;22(3):640-54</Citation><ArticleIdList><ArticleId IdType="pubmed">20197506</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Michigan</li></region></list><tree><country name="États-Unis"><region name="Michigan"><name sortKey="Wei, Hairong" sort="Wei, Hairong" uniqKey="Wei H" first="Hairong" last="Wei">Hairong Wei</name></region><name sortKey="Busov, Victor" sort="Busov, Victor" uniqKey="Busov V" first="Victor" last="Busov">Victor Busov</name><name sortKey="Georgieva, Tatyana" sort="Georgieva, Tatyana" uniqKey="Georgieva T" first="Tatyana" last="Georgieva">Tatyana Georgieva</name><name sortKey="Kumari, Sapna" sort="Kumari, Sapna" uniqKey="Kumari S" first="Sapna" last="Kumari">Sapna Kumari</name><name sortKey="Yordanov, Yordan" sort="Yordanov, Yordan" uniqKey="Yordanov Y" first="Yordan" last="Yordanov">Yordan Yordanov</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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